Extract number of INDELs of a specific position for bam file or IGV

Question

[igit_b]

I'm working with Nanopore data that naturally has a lot of INDELs. Is there a way to get all the deletions/insertions from a specific position in the genome for all reads, as shown in IGV? (I would like to get it for many positions)

Thanks

[GenoMax]

Take a look at igvtools included in IGV or bamcount (LINK).