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3.6 years ago
Abbas.M
•
0
I am trying to do GWAS in GAPIT but it is showing the following error again and again. I have been trying to figure out this problem. Can anyone explain what is the reason behind it.
Error in merge.data.frame(PWIP$PWIP, GI[, c("SNP", "effect")], by.x = "SNP", :
negative length vectors are not allowed
In addition: There were 18 warnings (use warnings() to see them)
Called from: merge.data.frame(PWIP$PWIP, GI[, c("SNP", "effect")],
by.x = "SNP", by.y = "SNP")
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Details of my data:
At first,I have tried to do association using genotype data in HapMap format, then I thought the problem would be in HapMap file. To check it, I have converted it into numerical format, and tried again but still doesn't work.