How would I convert a file that is fq.gz (fastq.gz) to BED file format?
I'm working on the Iridis command line (MobaXterm; Linux command line) - what code can I use to achieve this?
May I ask why you are doing that? (by the way, do you mean fastq.gz?).
You can get something like:
You should use bowtie2 or bwa to map fq.gz to some reference genome (human:hg38/hg19) first to get the sam file and use bedtools to convert sam file to bed file.
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