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116,038 results • Page
1 of 2321
Sort: Rank
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Votes
Replies
0
votes
0
replies
6
views
Problem generating paired end reads when converting Cell Ranger's BAM result to FASTQ
fastq
bam
bioinformatics
10 minutes ago by
ntuzov
• 0
0
votes
0
replies
5
views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse
JBrowse2
13 minutes ago by
I0110
▴ 130
0
votes
0
replies
18
views
RSEM: Error: reads file does not look like a FASTQ file
FASTQ
RSEM
updated 50 minutes ago by
GenoMax
140k • written 59 minutes ago by
Mohamed Abderrahmane
▴ 10
0
votes
0
replies
39
views
Plink merge errors.
cygwin64
bed
PLINK
updated 30 minutes ago by
Ram
43k • written 3 hours ago by
Dinmukhamed
• 0
0
votes
1
reply
104
views
Tissue specific mRNA expression dataset in human and mouse
tissue
specificity
updated 5 hours ago by
BioinfGuru
★ 1.6k • written 16 hours ago by
Shicheng Guo
★ 9.4k
0
votes
3
replies
114
views
Mapping ortholog human and mouse transcript
biomart
4 hours ago by
1769mkc
★ 1.2k
0
votes
2
replies
78
views
How do I get the gene annotations as a text file from a genebank file?
genebank
sequence-annotation
updated 1 hour ago by
GenoMax
140k • written 6 hours ago by
eae6d2e7
• 0
3
votes
2
replies
170
views
News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
11 minutes ago by
Johannes W. Dietrich
• 0
794
votes
167
replies
139k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 9 weeks ago by
Biostar
2.6k • written 7.3 years ago by
Istvan Albert
100k
0
votes
1
reply
60
views
Alignment with new reference
alignment
updated 1 hour ago by
GenoMax
140k • written 7 hours ago by
marco.barr
▴ 30
0
votes
0
replies
46
views
Bowtie2 alignment rate
galaxy
Bowtie
alignment-rate
updated 30 minutes ago by
Ram
43k • written 10 hours ago by
pavithraashokkumar818
• 0
1
vote
1
reply
119
views
Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
scRNA
RNAseq
updated 10 hours ago by
Soheil
▴ 100 • written 22 hours ago by
sithlordashley
• 0
0
votes
0
replies
42
views
Variant calling of GBS data for polyploid plant
GBS
variants
polyploid
plant
10 hours ago by
analyst
▴ 10
0
votes
0
replies
51
views
Convert to ENTREZGENE
maize
ENTREZGENE
13 hours ago by
sansan_96
▴ 50
1
vote
0
replies
58
views
Synthetic lethality and cancer database
interaction
lethal
synthetic
15 hours ago by
Shicheng Guo
★ 9.4k
4
votes
9
replies
945
views
Error in openning FastQC
fastqc
igv
updated 18 hours ago by
GenoMax
140k • written 7 months ago by
huynhthienphai
• 0
0
votes
1
reply
103
views
vcf file: number of samples does not match number of columns
vcf
bcftools
updated 18 hours ago by
Pierre Lindenbaum
160k • written 18 hours ago by
ekirsch
• 0
0
votes
4
replies
241
views
Is it reasonable to discard reads that show variation of quality across its length?
Trimming
16 hours ago by
BRENO
• 0
0
votes
5
replies
186
views
Error running local blastn in R using system2
blastn
NCBI
R
1 hour ago by
Harrison
• 0
16
votes
10
replies
680
views
6 follow
Forum:
F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 2 hours ago by
Madelaine Gogol
5.3k • written 1 day ago by
Ann
★ 2.4k
0
votes
0
replies
72
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 20 hours ago by
Ram
43k • written 20 hours ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
62
views
News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 20 hours ago by
Ram
43k • written 21 hours ago by
carlopecoraro2
★ 2.4k
1
vote
9
replies
3.5k
views
Error in CIBERSORTx
RNA-seq
CIBERSORT
LM22
updated 22 hours ago by
Ram
43k • written 17 months ago by
Manav
• 0
0
votes
1
reply
134
views
Annotation of Complex genomes using NCBI Genome Workbench
Genome-Workbench
MAKER
updated 22 hours ago by
Lissa Cruz Saavedra
• 0 • written 1 day ago by
SAsciences
• 0
0
votes
1
reply
83
views
Looking for RPIP Illumina kit probe sequences
Sequences
Illumina
updated 22 hours ago by
GenoMax
140k • written 23 hours ago by
David Tachiquín
• 0
0
votes
9
replies
309
views
Low number of both surviving reads after trimming
trimmomatic
trimming
17 hours ago by
Jay
• 0
0
votes
2
replies
134
views
ONT direct RNA sequencing
DRS
ONT
updated 21 hours ago by
Ram
43k • written 1 day ago by
Karina
• 0
2
votes
4
replies
153
views
Number of CPUs to use by DRAP for transcriptomic assmbly
DRAP
CPU
transcriptomics
1 hour ago by
Mohamed Abderrahmane
▴ 10
3
votes
2
replies
128
views
Gene reads all zero for each sample
R
salmon
DE
DESeq2
1 day ago by
DYLAN NICO
• 0
0
votes
2
replies
194
views
Can I have multiple active GDC download tokens?
TCGA
updated 1 day ago by
Zhenyu Zhang
★ 1.1k • written 3 days ago by
mrk
• 0
0
votes
0
replies
74
views
Contradictions in GSEA results
GSEA
Enrichment-analysis
PEA
updated 1 day ago by
Ram
43k • written 1 day ago by
Tolga
▴ 20
0
votes
0
replies
70
views
Illumina Dna Prep kit for sequencing phage linear genomes
tagmentation
transposons
phagetermini
sequencing
1 day ago by
alenew.am
• 0
0
votes
3
replies
367
views
FindAllMarkers not working (Error (data layers are not joined. Please run JoinLayersWarning: When testing 1 versus all)
FindAllMarkers
seurat
re-clustering
1 day ago by
Nitin
• 0
0
votes
1
reply
108
views
(sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
scRNA-seq
updated 1 day ago by
Ram
43k • written 1 day ago by
chiditatawmbi
• 0
0
votes
1
reply
130
views
Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization
rnaseq
updated 1 day ago by
Ram
43k • written 1 day ago by
Picasa
▴ 640
0
votes
0
replies
88
views
How to change alternate conformation occupancy ?
Bio.PDB.Atom
Bio.PDB
biopython
updated 1 day ago by
Ram
43k • written 1 day ago by
udakshi
• 0
0
votes
0
replies
109
views
Training
chip-seq
ScATAC-seq
1 day ago by
Manhezz
• 0
1
vote
2
replies
146
views
Issue with making local BLAST database
R
mitochodrial
diatoms
blast
ncbi
updated 21 hours ago by
Ram
43k • written 1 day ago by
Begonia_pavonina
▴ 140
1
vote
1
reply
299
views
diffbind : killed dba.count(DBsample, bParallel=FALSE)
diffbind
r
atacseq
1 day ago by
Pierre Lindenbaum
160k
1
vote
2
replies
138
views
Flow Cytometry Data Analysis by Seurat
Seurat
updated 1 day ago by
Ram
43k • written 1 day ago by
gdfsnkfns
• 0
1
vote
11
replies
318
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
updated 23 hours ago by
GenoMax
140k • written 1 day ago by
Lila M
★ 1.2k
2
votes
2
replies
138
views
Volcano Plot Output Inquiry: Graphs Facing Down
rstudio
volcano-plot
updated 1 day ago by
dariober
14k • written 1 day ago by
Pumla
• 0
0
votes
1
reply
106
views
Merging featureCounts output for different species
featureCounts
RNA-seq
updated 21 hours ago by
Ram
43k • written 1 day ago by
Christian
• 0
3
votes
2
replies
158
views
Interproscan taking so much time
slurm
interproscan
transcriptomics
updated 1 day ago by
dthorbur
★ 1.7k • written 1 day ago by
Mohamed Abderrahmane
▴ 10
0
votes
0
replies
86
views
Combine rename and rmdup in SeqKit to remove duplicate sequences and append N in header? Sort by occurence?
seqkit
fasta
1 day ago by
Broccoli
• 0
0
votes
0
replies
82
views
Is there a good tool/reference for PBP and porin analysis
PBP
porin
1 day ago by
blur
▴ 280
0
votes
0
replies
97
views
meta-analysis on RNA seq AND microarray results
microarray
RNA
1 day ago by
liuyibin2005
• 0
49
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 1 day ago by
Istvan Albert
100k • written 8.1 years ago by
Ram
43k
0
votes
0
replies
81
views
SPOTlight deconvolution logFC, logFC cohen or mean.AUC
spatial-transcriptomics
SPOTlight
logFC
deconvolution
updated 1 day ago by
Ram
43k • written 1 day ago by
M'zelle
• 0
0
votes
5
replies
255
views
calculate mismatch rate from VCF file
mismatch-rate
VCF
updated 1 day ago by
Ram
43k • written 1 day ago by
Dora
▴ 10
116,038 results • Page
1 of 2321
Recent Votes
The Biostar Handbook. A bioinformatics e-book for beginners.
Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
Answer: Interproscan taking so much time
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
F*up Night style events for Bioinformatics ? Comment if you're interested!
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Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
by
Johannes W. Dietrich
• 0
You are right, the deadline is a bit short. I have successfully managed two other Research Topics, but we had to extend the deadlines for b…
Comment: DESeq2 and normalization
by
dsull
★ 5.7k
The `DESeq` command already does the necessary work that you'll need for your analysis (including normalization); it gets you your log2Fold…
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
Mohamed Abderrahmane
▴ 10
Ah ok, I can see now, thanks, have a good day!
Comment: Error running local blastn in R using system2
by
Harrison
• 0
Also, `nt_euk.nal` is just one file. There are other `nt_euk` files in my directory with different extensions (`.ndb`, `.nos`, `.not`, `.nt…
Comment: Error running local blastn in R using system2
by
Harrison
• 0
Yes, in my actual script I use the whole path to nt_euk. I was just showing `C:/data/nt_euk` as shorthand for the full path. There are no s…
Comment: Error running local blastn in R using system2
by
Harrison
• 0
I am seeing `'cat' is not recognized as an internal or external command, operable program or batch file.`
Comment: Alignment with new reference
by
GenoMax
140k
> I'd like to realign my sequences to a reference that doesn't include > the base segment corresponding to the enzyme interval. How can I >…
Comment: How do I get the gene annotations as a text file from a genebank file?
by
GenoMax
140k
You will have to use a programming approach. BioPython is one option: https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/…
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
GenoMax
140k
> Is it because implementing multi-threading requires additional effort on their part Yes but in addition considerations here are importan…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Madelaine Gogol
5.3k
That sounds fun, and I've got some of these that I have told many people about (to keep them from making the same mistakes as me). I am pla…
Comment: Mapping ortholog human and mouse transcript
by
1769mkc
★ 1.2k
for hgnc and ensembl that can be done for transcript id for human to mouse ortholog its difficult to parse and map the exact version from g…
Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
by
Mensur Dlakic
★ 26k
Take it from someone who has hosted both a successful and a failed research topic: these deadlines are unrealistic. I am guessing you are p…
Answer: Tissue specific mRNA expression dataset in human and mouse
by
BioinfGuru
★ 1.6k
Awesome, years ago I wrote my thesis on the use of Tau to calculate tissue specificity, enjoy! The supplementary materials in the paper is…
Answer: Mapping ortholog human and mouse transcript
by
BioinfGuru
★ 1.6k
That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
Comment: Nanopore multisample variant calling
by
emilydolivo97
• 0
hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
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