How to count the paired end reads number in given regions
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13 months ago
ben.kunfang ▴ 30

Hi,

I have a celltype.bwt2pairs.bam file from HiC-Pro. I would like to count the number of the paired reads in given regions, for example, how many paired read on the region chr1:80426-82426 and its mate on the region chr1:75071-77071.

Thanks in advance,
Kun

paired-end bam Hi-C HiC-Pro • 304 views
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