Entering edit mode
2.7 years ago
Kumar ▴ 100
I would like to carryout pan-genome analysis using
roary, so I need to convert
gbk files to
gff/gff3 files (must have fasta sequence at the end of each gff files) example file for roary gff format. I am aware that prokka can generate
roary compatible gff3 file format, but the problem is I have large number of datasets downloaded from ncbi. Therefore, I would like to proceed pan-genome analysis with ncbi annotations. Could anyone please suggest me any tool to do the same.
Thanks in advance.
Roary homepage says to use a perl script...
I prefer the prokka way...
See if this helps...