I am working in the oncology field and I would like to test this pipeline .
GATK -Germline short variant discovery (SNPs + Indels)
Unfortunately I'm not able to find raw fastq data to test the pipeline.
Does GATK provide datasets to test their pipelines?
I found this article, but unfortunately I'm not able to download the data from the linked source. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243306/pdf/nihms531590.pdf
Thank you very much, I'm open to every advice about how to handle it. AY