I made 3 binary files from MAP and PED files.
I'd like to know how to get individual genotypes per specific SNP.
When I open the .bim file, I just see the SNP and allele information but individual information (i.e. sample Id)
How to map the information?
I'd like to get information like this, and could open in Python or R.
Do I need some other tools for that? please let me know. For example,
SNP SAMPLE GENOTYPE rs53576 1111 AA rs53576 1112 GA rs53576 1113 GG rs53576 1114 GA
Thank you in advance.