Question: How to select a few TF binding site using JASPAR on UCSC
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gravatar for rb56
5 weeks ago by
rb560
rb560 wrote:

I'm trying to find Transcription factor binding sites using JASPAR on UCSC. The area of thee genome I am interested in ends up having a lot of TF binding site, is there a way to customize JASPAR to include only few interesting TF and their binding sites?

Thank you

ucsc atac seq jaspar • 121 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by rb560

I have doubt that the Biostarts is the right place for posting such questions. However still you are not clear, what do you mean exactly by "...only few interesting TF and their binding sites" ! Yo have such results because of the fact that: several TF are binding to a regulatory region in the genome. There are tissue-specific TFs, that may tend to attach to a regulatory region of the genome in different tissue. Add to this that even the stage of development and cell cycle could be detrimental for TF binding even in the same tissue or cell. These could contibute to what you get!

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by Hamid Ghaedi460
0
gravatar for rb56
5 weeks ago by
rb560
rb560 wrote:

I meant out of all the TFs, is there a way to visualize only a few, instead of having them all together at once.

ADD COMMENTlink written 5 weeks ago by rb560
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