read.maf using maftools
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10 months ago
lathavet • 0

Hi, I am trying to read in a maf file with more than 500 samples using read.maf, but my getSampleSummary has only 34 samples . Am I missing any option to read in large maf files? I am using maftools from Bioconductor

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A maf file with 500 samples is fine to work with and not going to be a large file. Please provide more details to get more help. Do you work with public data? If so, provide a link or information to get your data. If you have your own data try to provide a snapshot of your data, your code, and what you tried so far. In this way, you have more chance to resolve the issue. What about when you tried read.maf function? What did you get after running this on your data?

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