Nanostring DEGs Data Analysis using NanoStringDiff R package

Question

[mjavad2012]

Dear All,

I'm able to create NanoStringDataObjest data which has all 3 normalization factors as well as the expression counts and annotation info. When I run the glm.LRT() in R it's taking forever time. I wonder if anybody has experience with this analysis and had the same problem or if there's better methods to deal with nanostring DEGs analysis please refer it me.

result <- glm.LRT(NanoStringDataObjest, Beta=ncol(design.full), design.full, contrast=contrast)

Thank you,
Mohammad