Is there a software that enables exploration of patterns and associations in heatmaps?
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7 months ago
caro-ca ▴ 20

Dear, I want to know if there is a software that can zoom a portion of my created heatmap as I do not want to show a complete visual representation of the heatmap, instead, I would like to plot a specific region/cluster in my heatmap for an easier explanation of my data. I know there is an incredible tool called Next-Generation Clustered Heat Map (NG-CHM) Viewer, but I am facing an installation problem and I don't know when I will get an answer.

I hope you could help me out. Thank you in advance.

NG-CHM heatmap data visualization • 332 views
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Is there any reason you can't just subset the data and remake the heatmap?

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I made a normalized pairwise comparison of the presence and absence of a specific structural variant in thousand isolates. The challenge is to extract the clustered matrix from heatmap.2 and plot it in excel to easily know what is the sample on the x and y-axis. This is the reason why I considered using a software that already does the zooming. However, if you have any recommendations for a different approach I would appreciate it.

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On the other hand, I could solve the problem. I found a link to export the matrix from heatmap2.
Thank you anyway.

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