Entering edit mode
3.6 years ago
zizigolu
★
4.3k
Hi
I want to predict micrpsattelite instability by MSIpred
software which in a part of code needs exome size like
tagged_snvs_maf.make_feature_table(exome_size=44)
You see for TCGA
data they put 44
here
I have whole genome sequencing
is exome size here means captured size of genome
?
If so, in my data “94% of the known genome being sequenced to at least 8× coverage”, so should I 3000 MB * 0.94 = 2820.
I have emailed the author but no response
Thank you for any help