Question: Error while converting sra to fastq
gravatar for gunavaran.15
5 months ago by
gunavaran.150 wrote:

I have been trying to convert an 'sra' file to 'fastq' format using the SRA Toolkit. I used the following command

fastq-dump SRR8357214

I got the following error " fastq-dump.2.10.8 err: directory not found while opening manager within virtual file system module - failed SRR8357214"

Does anybody know a solution? Thank you so much in advance.

dna fastq sra ncbi • 229 views
ADD COMMENTlink written 5 months ago by gunavaran.150

This has been asked many times before, please use google and the search function.

Alternatively try: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD REPLYlink written 5 months ago by ATpoint45k

Have you checked the vdb-config (vdb-config -i) file?

ADD REPLYlink modified 5 months ago • written 5 months ago by Arup Ghosh2.8k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1488 users visited in the last hour