Question: Error while converting sra to fastq
0
gravatar for gunavaran.15
5 months ago by
gunavaran.150 wrote:

I have been trying to convert an 'sra' file to 'fastq' format using the SRA Toolkit. I used the following command

fastq-dump SRR8357214

I got the following error " fastq-dump.2.10.8 err: directory not found while opening manager within virtual file system module - failed SRR8357214"

Does anybody know a solution? Thank you so much in advance.

dna fastq sra ncbi • 229 views
ADD COMMENTlink written 5 months ago by gunavaran.150

This has been asked many times before, please use google and the search function.

Alternatively try: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD REPLYlink written 5 months ago by ATpoint45k

Have you checked the vdb-config (vdb-config -i) file?

ADD REPLYlink modified 5 months ago • written 5 months ago by Arup Ghosh2.8k
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