Does anyone have any idea if there is any tool available to detect population structure from copy number data rather than SNP data?
Maybe this can help :
Schrider, DR, Hahn, MW, and Begun, DJ. (2016) Parallel Evolution of Copy-Number Variation Across Continents in Drosophila melanogaster. Molecular Biology and Evolution. 33: 1308-1316.
And their scripts : https://github.com/andrewkern/poolDiffCNV
Thanks for sharing the link!
I was looking for code implementation of the Schrider method, too. And this method is probably the only one that is designed for analyzing pooled sequencing data.
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