Question: snippy multi is prompting unreadable files
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gravatar for 3335098459
5 days ago by
333509845920
333509845920 wrote:

Hi,

I have tried generating tab file by pasting all the filenames and paths in excel and later converted that csv file using this command.

sed -e 's/,/\t/g' input.csv > input2.tab

and then ran the following command and this message showed up:

root@hon-pc:/home/fan/monas/fna# snippy-multi input2.tab --ref /home/fan/monas/fna/GCF_genomic.fna --cpus 4 > runme.sh 
Reading: input2.tab 
ERROR: [GCF_genomic.fna ] unreadable file '/home/fan/monas/fna/GCF_genomic.fna

Could you please guide me how to create input.tab file in linux command line (without using excel and csv format if there is problem with formatting the file)?

Secondly, I have already checked .fna format is acceptable and properly working with snippy. But this unreadable shows up in snippy-multi.

Regards

snp assembly gene • 42 views
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