I have tried generating tab file by pasting all the filenames and paths in excel and later converted that csv file using this command.
sed -e 's/,/\t/g' input.csv > input2.tab
and then ran the following command and this message showed up:
root@hon-pc:/home/fan/monas/fna# snippy-multi input2.tab --ref /home/fan/monas/fna/GCF_genomic.fna --cpus 4 > runme.sh Reading: input2.tab ERROR: [GCF_genomic.fna ] unreadable file '/home/fan/monas/fna/GCF_genomic.fna
Could you please guide me how to create input.tab file in linux command line (without using excel and csv format if there is problem with formatting the file)?
Secondly, I have already checked .fna format is acceptable and properly working with snippy. But this unreadable shows up in snippy-multi.