I need to extract variants from VCF file for ACMG genes. I tried to create bed file from UCSC browser. But the bed file contains many accession ids for a single gene. How to make a bed file which will contains only one accession ID for one gene?
Thanks a lot for your input! I will try this one :)
I tried this option. But I couldn't find the details for GRCh37. GRCh38 is the only genome available there. I used GRCh37 for my vcf file. Can you please suggest something to resolve this?
Hi Karthick, Of course GRCh38 is now the default on genome browsers, but you could access the '37' by clicking the
View in archive sitelink at the very bottom right-hand side of Ensmbl page. Alternatively, this is the direct link. The BioMart that you would access there would have GRCh37 data.