Question: kegg enrichment and pathway analysis
1
gravatar for MEITUO
4 weeks ago by
MEITUO10
MEITUO10 wrote:

hi!

I ran eggong-emapper to get the emapper.annotations file, which has the information of KEGG pathway, ko..., but how I can get the metabolism pathway and functional gene enrichment analysis. Is there any tutorial?

gene • 212 views
ADD COMMENTlink modified 4 weeks ago by RamRS30k • written 4 weeks ago by MEITUO10

Have you tried DAVID? It does functional gene enrichment analysis and other interesting analysis for you.

EDIT : here you can ask for help specifically about "eggnog-mapper", maybe what you asked has been answered already. In the original comment, I just introduced a widely used web-tools for enrichment analysis.

ADD REPLYlink modified 19 days ago • written 4 weeks ago by Hamid Ghaedi460

hi!

the input file of DAVID is a gene list, is the gene list in the emapper.annotations file? or how can i get the gene list?

ADD REPLYlink written 4 weeks ago by MEITUO10
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