Question: What is the format of the input file to the IGV software?
0
gravatar for Fahimeh.6868
4 weeks ago by
Fahimeh.68680 wrote:

Hi everyone I am going to calculate the coverage of mapped data of the ngs analysis. I found igv software. What is the format of the input file to the IGV software? Do I need to index the bam file?

rna-seq alignment • 108 views
ADD COMMENTlink modified 26 days ago • written 4 weeks ago by Fahimeh.68680

Nice that you did not even consider to add some more details or to show some minimal effort after your last (identical) question got closed. input file to the igv softwar

ADD REPLYlink written 4 weeks ago by ATpoint40k

Do I need to index the bam file?

You need to co-ordinate sort and index the BAM file.

ADD REPLYlink written 26 days ago by genomax91k
1
gravatar for Pierre Lindenbaum
4 weeks ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum131k wrote:

https://software.broadinstitute.org/software/igv/FileFormats

ADD COMMENTlink written 4 weeks ago by Pierre Lindenbaum131k
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