Question: Substitution model for a viral genome in RAxML
0
gravatar for mauricio.morales
4 weeks ago by
mauricio.morales0 wrote:

Hi! Which substitution model do you recommend for viral genomes (nucleotides) in RAxML?

I will do the following analysis "Rapid Boostrap + ML"

I think that for the first time it is good to use the GTR model, however, I would like to know your opinions.

Thank you

raxml sequence genome • 89 views
ADD COMMENTlink modified 29 days ago by Mensur Dlakic6.9k • written 4 weeks ago by mauricio.morales0
1
gravatar for Mensur Dlakic
29 days ago by
Mensur Dlakic6.9k
USA
Mensur Dlakic6.9k wrote:

ModelFinder in IQ-TREE will quickly test many models and tell you which on is objectively the best. You may want to consider using IQ-TREE over RAxML in general.

ADD COMMENTlink written 29 days ago by Mensur Dlakic6.9k
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