Convert Loci to Gene Names?

Question

[pthom010]

I have a series of Medicago truncatula loci (Medtr3g093830.1, Medtr4g100630.1) and I wanted to get their gene names (ex. PR2 or UBQ5). I've been looking around with no success. Would anybody know about a resource I can use to retrieve these names for the respective loci? I have coding experience in Linux and R if it would be feasible to code for a solution.

Answer 1

[Fatima]

I'm not familiar with plant databases, but do you have their sequences? Have you tried blastx?

Have you tried to see which databases have the information that you're looking for?

http://planttfdb.gao-lab.org/tf.php?sp=Mtr&did=Medtr3g093830.1 https://phytozome-next.jgi.doe.gov/report/gene/Dcarota_v2_0/DCAR_006845