Question: Convert Loci to Gene Names?
0
gravatar for pthom010
4 months ago by
pthom0100
pthom0100 wrote:

I have a series of Medicago truncatula loci (Medtr3g093830.1, Medtr4g100630.1) and I wanted to get their gene names (ex. PR2 or UBQ5). I've been looking around with no success. Would anybody know about a resource I can use to retrieve these names for the respective loci? I have coding experience in Linux and R if it would be feasible to code for a solution.

rna-seq annotation gene • 125 views
ADD COMMENTlink modified 4 months ago by Fatima890 • written 4 months ago by pthom0100
0
gravatar for Fatima
4 months ago by
Fatima890
United states
Fatima890 wrote:

I'm not familiar with plant databases, but do you have their sequences? Have you tried blastx?

Have you tried to see which databases have the information that you're looking for?

http://planttfdb.gao-lab.org/tf.php?sp=Mtr&did=Medtr3g093830.1 https://phytozome-next.jgi.doe.gov/report/gene/Dcarota_v2_0/DCAR_006845

ADD COMMENTlink written 4 months ago by Fatima890
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1069 users visited in the last hour
_