Question: How does FastQTL deal with strand
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gravatar for Cindy
4 months ago by
Cindy10
Cindy10 wrote:

FastQTL phenotype.bed input does not have strand column as in QTLtools. How does the software deal with strand? I guess a related question would be say gene1 is on the reverse/minus strand in GTF file. Should its end position in GTF file be the TSS (transcription start site) for fastQTL phenotype.bed input? Thanks in advance.

rna-seq qtl • 138 views
ADD COMMENTlink modified 8 weeks ago by Biostar ♦♦ 20 • written 4 months ago by Cindy10
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