How to check scaffold of a SNP with assembled chromosomes and find out that scaffold is placed on which chromosomes?
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3.6 years ago
hassanyar • 0

I performed a re-sequencing from honeybee Apis cerana cerana we got many scaffolds ID for the locus of SNP because at that time the genome of Apis cerana was not assembled on the level of chromosomes. just last year it assembled on the chromosomes. My question is here, how to search the scaffold and SNP position and find out the locus of target SNP is on which chromosomes? Thanks in advance for your answering

SNP Assembly genome • 507 views
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