Entering edit mode
3.5 years ago
brighteyes1017
•
0
Hello,
I was wondering if anyone could clarify something about GCTA- COJO, specifically COJO-slct I think.
I understand that it is a tool that performs stepwise model selection to select independently associated SNPs. Does it first identify index SNPs upon which to condition? Or do I need to identify index SNPs first through LD clumping?
Background is that I've done a meta analysis on a few cohorts and want to identify independent SNPs.
Thank you!