I hope you are doing OK during this time.
I'm curious if someone knows the existence of a reference transcriptome for CAST/EiJ mouse strain or if anyone knows how to build from scratch (That even applies for the other "founder" strains such as 129S1, NOD, NZO, PWK, and WBS (considering that we already have for C57BL/6).
I need that reference transcriptome for quantifying an RNAseq experiment using Salmon.
I've been looking for that information for a while, but I didn't find anything conclusive.
I appreciate any insight/suggestions.
Thanks a lot and have a lovely week,
Juan C.S. Arcila.