Hello, I got data from a lab , that is a plasmid that has been recently sequenced with nanopore. The plasmid is roughly 8kb and contains 40 copies of the same insert. I have the sequences of the plasmid and the insert.
I would like to check that the plasmid does really contain the number of inserts it is supposed to (roughly 40 copies). What would be the best approach you would recommend to assembly the NGS data of this plasmid and count the repeats ?