I needed help with the interpretation of these copy number to scatter plots from 2 patients. I'm interested in copy number changes in the CCR4 gene on chr3. The data is derived from a custom target panel. I realize from the plots that both patients have copy number losses in CCR4. However, I need help understanding 1) why patient C has 2 orange segments in the CCR4 region (would each indicate a different allele?) 2) whether we can comment on the bi-allelic or mono-allelic nature of the losses in each patient
Appreciate your thoughts!