I am running blastn (blast+) version 2.9.0 on Ubuntu. My command is this blastn -task megablast -db nt -query blast.fasta -out blast_results.tsv -evalue 0.001 -outfmt "6 qseqid sseqid pident qstart qend sstart send evalue qlen slen staxids sscinames scommnames sblastnames sskingdoms" -remote. When I run this I get the error "Critical [blastn] External MBEDTLS version mismatch: 2.16.2 headers vs. 2.16.3 runtime" Can anybody help? Thanks, Jack
Are you using pre-compiled version of blast? Did you get it from NCBI?
I got blast using these instructions https://ngsprimer.wordpress.com/.