Entering edit mode
3.6 years ago
phswin92
•
0
Hello
I have a file converted from plink to vcf then I want to compare this vcf and other WGS vcf file.
but converted from plink to vcf file format doesn't run wgs vcf comparison tools.
CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample1 sample2 sample3 sample4 sample5 sample6
1 761252 AX-37361829 C T . . PR GT 0/0 0/0 0/0 0/0 0/0 0/0
1 762485 AX-83277131 C A . . PR GT 0/1 0/0 0/0 0/0 0/0 0/0
1 762589 AX-113622880 C G . . PR GT 0/1 0/0 0/0 0/0 0/0 0/0
can I merge sample1~7 GT to run the comparison tool??
I want to run vcf-compare or hap.py , but that vcf format doesn't run
please help