which site are good for NGS data?

Question

[ali.kian.saei]

i want to get NGS data for kidney cancer? how can i get it? and i want to find kind of mutation and position in gene for kidney cancer

[Bastien Hervé]

Try to get a publication about SNPs in kidney cancer, read it, then look for dataset number accession like GEO dataset

https://www.ncbi.nlm.nih.gov/search/all/?term=snp%20kidney%20cancer

Answer 1

[i.sudbery]

I find the Firehose analysis of TCGA to be pretty user friendly and easy to use if you want access to processed data. They have kidney cancer.

Look at their Mutation Annotation File downloads.

https://gdac.broadinstitute.org/