RNAseq example data

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3.6 years ago

rakinitopo ▴ 10

Hi!! I'm looking for an example dataset from RNA-seq expression data that have a time variable. I mean, what I need is some data measured over time and across tissues and genes that I could use for functional data analysis and time series. Does anyone know where I might find this kind of datasets? I would also be fine with other types of genomic data (methylation, mrna expression...). Thanks in advance!!!

expression RNA-Seq data next-gen • 651 views

ADD COMMENT • link updated 3.6 years ago by ATpoint 81k • written 3.6 years ago by rakinitopo ▴ 10

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Go to this site. Search with "RNAseq time". You can add/refine search adding terms as needed (e.g. human, mouse etc).

This post describes how to use the tool: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks

ADD REPLY • link 3.6 years ago by GenoMax 141k

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You could check section 4.8 of the edgeR manual. It contains both links to preprocessed time-course data and also example code and background information.

ADD REPLY • link 3.6 years ago by ATpoint 81k

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