Differentials Expressed Genes from each state in Monocle 2
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22 months ago
David_emir ▴ 430

Hi there,

I know that we can use differentialGeneTest to find genes that are most differentially expressed across the states by using the formula "~State". However, in the resulting data frame, there is no indication of the state number w.r.t. a given gene. Is it possible to get an extra column with a state number for a gene, essentially indicating which state a given gene represents as a marker? Something like the function "FindMarkers" outputs in the Seurat package?

Thanks in advance for any replies.

P.S: Original post

Dave

single cell monocle2 DGE State • 714 views
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