Question: Anybody knows any stand alone tool/pipeline for Bacterial Gene Ontology (GO) analysis?
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gravatar for Dineshkumar K
7 weeks ago by
Kasaragod, Kerala, India
Dineshkumar K40 wrote:

I have annotated amino acid sequences of various strains of particular bacterial species. I would like to carry out Gene Ontology analysis for the same. Therefore, could you please suggest me any standalone GO analysis tool/pipeline? Thanks in advance.

ADD COMMENTlink modified 6 weeks ago by shelkmike290 • written 7 weeks ago by Dineshkumar K40

Hello Dineshkumar K!

It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/14504/which-stand-alone-tool-pipeline-to-be-used-for-bacterial-go-analysis

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLYlink written 6 weeks ago by RamRS30k

I regret for the same and I have deleted the cross-post from the concerned community. Thank you for your valuable suggestion.

ADD REPLYlink written 6 weeks ago by Dineshkumar K40
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gravatar for andres.firrincieli
6 weeks ago by
andres.firrincieli1.0k wrote:

Hi Dinesh,

to assign GO classifications you can use eggNOG or InterProScan

ADD COMMENTlink written 6 weeks ago by andres.firrincieli1.0k
1
gravatar for shelkmike
6 weeks ago by
shelkmike290
Russian Federation
shelkmike290 wrote:

If you mean a GO enrichment analysis, I recommend GOAtools (https://github.com/tanghaibao/goatools)

ADD COMMENTlink written 6 weeks ago by shelkmike290
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