Anybody knows any stand alone tool/pipeline for Bacterial Gene Ontology (GO) analysis?
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7 months ago
Kumar ▴ 50

I have annotated amino acid sequences of various strains of particular bacterial species. I would like to carry out Gene Ontology analysis for the same. Therefore, could you please suggest me any standalone GO analysis tool/pipeline? Thanks in advance.

genome Bioinformatics gene sequence tool • 324 views
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Hello Dineshkumar K!

It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/14504/which-stand-alone-tool-pipeline-to-be-used-for-bacterial-go-analysis

This is typically not recommended as it runs the risk of annoying people in both communities.

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I regret for the same and I have deleted the cross-post from the concerned community. Thank you for your valuable suggestion.

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7 months ago

Hi Dinesh,

to assign GO classifications you can use eggNOG or InterProScan

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7 months ago
shelkmike ▴ 500

If you mean a GO enrichment analysis, I recommend GOAtools (https://github.com/tanghaibao/goatools)

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