Question: (Closed) Top 10 clonotype frequency
0
gravatar for roberts
8 weeks ago by
roberts30
roberts30 wrote:

Hello I am using

top10_clonotype <- table(AD007S$clonotype_id)
top10_clonotype <- as.data.frame(top10_clonotype)
top10_clonotype <- slice_max(top10_clonotype, order_by = top10$freq, n=11)

I am trying to pick out the top 10 most frequent clonotypes in my object. This code was working before but now I keep getting the warning -

in order(x, decreasing = TRUE) : argument 1 is not a vector
In addition: Warning message:
Unknown or uninitialised column: `freq`.

Any suggestions?

seurat R 10x • 102 views
ADD COMMENTlink modified 8 weeks ago by GenoMax92k • written 8 weeks ago by roberts30

Hello roberts!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

ADD REPLYlink written 8 weeks ago by jared.andrews078.0k
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