I'm trying to run variant interaction analysis in PLINK with the following comman:
plink \ --bfile plink \ --pheno pheno \ --epistasis \ --set-test \ --set list_of_variants \ --out plink
But as a reslt have a following error:
Error: Last token in --set file isn't 'END'.
list_of_variants is a .set file which i though is just a list of rsIDs (in this case two lists separated with tab). Apparently, however, it is not the case. What the correct format for .set file in PLINK?