RPKM value and TPM value
1
0
Entering edit mode
13 months ago
anjuraas ▴ 10

Hi all I have downloaded tumor data from FireBrowse and normal data from GTEx. I want to find the differential expression between normal and tumor. But both the files are in different units. Tumor file is in RPKM values and normal file is in log2(TPM) values. Also it is not possible for me to get the raw data. What can I do in this situation? Please help me. Thanks in advance

RPKM TPM tumor normal • 538 views
ADD COMMENT
1
Entering edit mode
13 months ago

You can go from RPKM to TPM

https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/

If you have FPKM, you can easily compute TPM

latex

Found this googling : RPKM to TPM conversion?

ADD COMMENT
0
Entering edit mode

Hi Thanks a lot for your reply.

ADD REPLY
0
Entering edit mode

You're welcome ! If the answer solves your question you can mark it as solved/accepted by clicking on the check icon at the left of the post. Thanks

ADD REPLY

Login before adding your answer.

Traffic: 1753 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6