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• Methods of classifying, not detecting, structural variation?
  I have completed a genome-wide scan for structural variants in genomic loci of interest for my di...
• structural variants from mauve
  Hi,I am doing de novo assembly of a bacterial genome from nanopore sequence reads with canu. I wa...
• Structural variants detection from assembled genome from Nanopore sequence data
  Hi, I have assembled and polished the genome from long read sequences with canu and pilon respec...
• aneuploidy detection in DNA sequencing
  I am planning to perform DNA seq for detection of aneluploidy condition in circulatory DNA. Is t...
• structural variants in de novo genome assemblies
  What are some tools that can compare **2 or more plant genomes** that are ***de novo*** assembled...
• Detecting structural variants when comparing assembled genome and reference
  I have a bacterial genome which has been assembled de novo from nanopore reads. I wish to compare...
• Variant Calling between Microbial Populations
  I was wondering if anyone knew the caveats to doing variant calling on populations of microbes? ...
• get deletion coverage from .bam file
  Dear all: I mapped the NGS whole genome sequencing reads to reference genome sequence, to detect...
• Identifying Recombination Among Known Viruses With Illumina Phred Scores
  Hi all, I'm trying to figure out where I could go wrong with the following analysis. I'm relati...
• detect large indels
  What is the best way to detect large indels ? I mapped reads of whole genome shotgun sequencing a...
• GRIDSS: the Genomic Rearrangement IDentification Software Suite
  GRIDSS is typically used for detecting structural variation breakpoints from short read sequencin...
• Tools For Structural Variants
  I am currently working on human whole genomes and I am curious to know the tools the bioinformati...
• How to visualize duplicated segments in a de novo Whole Genome Assembly
  Hi, I am searching for tools to visualize regions of a whole genome assembly that are represente...
• Sanger validated SNP not present in IGV despite 10X coverage at site??!!
  Hi, Sanger validation has shown that there is a c.26T>C variant detected in REEP1. The genomi...