Kraken2 Error in buildind NCBI bacterial database

Question

[MSRS]

Hi,

I am trying to build an NCBI RefSeq database of bacteria with Kraken2

kraken2-build --download-library bacteria --db bacteria

Error messages

rsync_from_ncbi.pl: unexpected FTP path (new server?) for na

Any solution? Thanks in advance.

Answer 1

[Medhat]

Similar issue here -> https://github.com/DerrickWood/kraken/issues/114#issuecomment-610912961. Maybe it will help.

[MSRS]

Thank you Medhat, It works.

[igor]

It was recently fixed: https://github.com/DerrickWood/kraken2/commit/7d9252d6116d2c0dc60563848f5ab0ab0ddc965e

[Medhat]

Right, it looks like @shaminur has an old version, thanks igor.