Downloading promoter sequences from UCSC in bed format
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3.5 years ago
Jamie Watson ▴ 10

Hi,

I need to get promoter coordinates in human genome from hg19 assembly. I have used UCSC table browser to obtain these promoters. However, the bed file I got only had 3 columns. How can I get 9 additional column too as mentioned here:

http://genome.ucsc.edu/FAQ/FAQformat.html#format1

genomics gene Assembly • 892 views
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Entering edit mode
3.5 years ago
GenoMax 141k

BED format requires only first three columns. So the file you got is in proper BED format.

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