Question: Downloading promoter sequences from UCSC in bed format
0
gravatar for Jamie Watson
3 months ago by
Jamie Watson0 wrote:

Hi,

I need to get promoter coordinates in human genome from hg19 assembly. I have used UCSC table browser to obtain these promoters. However, the bed file I got only had 3 columns. How can I get 9 additional column too as mentioned here:

http://genome.ucsc.edu/FAQ/FAQformat.html#format1

ADD COMMENTlink written 3 months ago by Jamie Watson0
1
gravatar for GenoMax
3 months ago by
GenoMax94k
United States
GenoMax94k wrote:

BED format requires only first three columns. So the file you got is in proper BED format.

ADD COMMENTlink written 3 months ago by GenoMax94k
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