Can somebody interpret these blobtools graphs please. My genome is an algal species.
and which contigs are contaminants and need to be removed?
entire assembly is ~2000 contigs.
no-hits: 594 contigs
Bacteria: 252 contigs
Proteobacteria: 817 contigs
Haptista: 6 contigs
Chordata: 17 contigs
Euglena: 1 contig
Ascomycota: 3 contigs
Streptophyta: 7 contigs
Chlorobi: 1 contig
Chlorophyta: 36 contigs
Most all the Proteobacteria have the same GC content as my organisms but are those all contaminants? So more than half of my contigs are contaminants?
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