Blobtools output files
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12 months ago

blobtools graph #1 blobtools graph #2

Can somebody interpret these blobtools graphs please. My genome is an algal species.

https://ibb.co/ZmgD7K8 https://ibb.co/mNf8GBw

blobtools genome assembly contamination • 457 views
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and which contigs are contaminants and need to be removed?

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entire assembly is ~2000 contigs.

no-hits: 594 contigs Bacteria: 252 contigs Proteobacteria: 817 contigs Haptista: 6 contigs Chordata: 17 contigs Euglena: 1 contig Ascomycota: 3 contigs Streptophyta: 7 contigs Chlorobi: 1 contig Chlorophyta: 36 contigs

Most all the Proteobacteria have the same GC content as my organisms but are those all contaminants? So more than half of my contigs are contaminants?

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