Question: Patient-derived DE to identify overexpression
gravatar for bilodate
6 weeks ago by
bilodate0 wrote:

Hi all! I'm analyzing patient-derived RNA-seq data from TCGA.

I performed a differential expression analysis to identify which cancer types show significant expression differences (I have a specific gene), compared to healthy normal tissue samples from the given cancer project. I compared not only matched controls by barcode, but everything I found. Now, I would like to identify the number of patients and their percentage in some cancer types (cancer samples only), with the "overexpression" of this specified gene. I am little bit confused about this task, how should I do it precisely?

rna-seq gene • 88 views
ADD COMMENTlink written 6 weeks ago by bilodate0
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