Question: how can I get detailed clinical data of a sample in a study included in GEO?
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gravatar for surabhi.seth
3 days ago by
surabhi.seth0 wrote:

If I am interested in any study in GEO and I want to get the clinical data of the patient sample included in that study. then from where I can get detailed clinical data of a sample in a study included in GEO?

rna-seq • 68 views
ADD COMMENTlink modified 3 days ago by ATpoint40k • written 3 days ago by surabhi.seth0

Basic information like age, gender, disease stage you can get from SRA Run Selector.

Example: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA609278&o=acc_s%3Aa

ADD REPLYlink written 3 days ago by Arup Ghosh2.7k
2
gravatar for ATpoint
3 days ago by
ATpoint40k
Germany
ATpoint40k wrote:

On the bottom of the GEO pages there is a field with Series Matrix File(s) which is a (unhandy) text file with metadata that are often not being displayed when just browsing the page. I often found valuable information there. Still, there is no guarantee that the data you seek are in the or are even publically available. If not included in the paper (or its supplement) or on GEO you might need to contact the authors.

ADD COMMENTlink written 3 days ago by ATpoint40k
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