SparCC repository gone

Question

[andres.firrincieli]

It seems that the SparCC repository does not work anymore: https://bitbucket.org/yonatanf/sparcc/downloads/

Does anyone have a link with the SparCC python sricpts?

Thanks!

[Wayne]

Just adding a note to point out there's also a related discussion from about a 18 months later over here.

Answer 1

[antonioggsousa]

Hi,

I do not have the SparCC scripts. You may need to contact the authors of the tool.

I think there is a fast version of SparCC: https://github.com/shafferm/fast_sparCC

There is also an implementation in R within the SpiecEasi R package: https://www.rdocumentation.org/packages/SpiecEasi/versions/1.0.7/topics/sparcc

I hope this helps,

António

[andres.firrincieli]

The fast version is just perfect.

Thank you!

Answer 2

[andres.firrincieli]

fast_sparCC was extremely painful to install. So if someone is having problems with fast_sparCC installation you can try with fastspar: https://github.com/scwatts/fastspar