Question: SparCC repository gone
0
gravatar for andres.firrincieli
4 days ago by
andres.firrincieli950 wrote:

It seems that the SparCC repository does not work anymore: https://bitbucket.org/yonatanf/sparcc/downloads/

Does anyone have a link with the SparCC python sricpts?

Thanks!

ADD COMMENTlink modified 3 days ago • written 4 days ago by andres.firrincieli950
2
gravatar for antonioggsousa
4 days ago by
antonioggsousa1.5k
antonioggsousa1.5k wrote:

Hi,

I do not have the SparCC scripts. You may need to contact the authors of the tool.

I think there is a fast version of SparCC: https://github.com/shafferm/fast_sparCC

There is also an implementation in R within the SpiecEasi R package: https://www.rdocumentation.org/packages/SpiecEasi/versions/1.0.7/topics/sparcc

I hope this helps,

António

ADD COMMENTlink written 4 days ago by antonioggsousa1.5k

The fast version is just perfect.

Thank you!

ADD REPLYlink written 4 days ago by andres.firrincieli950
0
gravatar for andres.firrincieli
3 days ago by
andres.firrincieli950 wrote:

fast_sparCC was extremely painful to install. So if someone is having problems with fast_sparCC installation you can try with fastspar: https://github.com/scwatts/fastspar

ADD COMMENTlink written 3 days ago by andres.firrincieli950
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