Quick way of clearing out rs IDs from VCF?
0
0
Entering edit mode
3.5 years ago
devenvyas ▴ 740

Anyone know of a quick way to clear SNP rs IDs from a VCF file?

I am trying to run TPBWT ( https://github.com/23andMe/phasedibd ). The rs IDs match between my VCF and my map file, but it keeps claiming that they don't match. Any suggestion on how to quickly flush them out from the VCF file?

VCF • 756 views
ADD COMMENT
0
Entering edit mode

Please define "clear SNP rs" and "flush them out"?

You can remove the ID with:

bcftools annotate -x ID
ADD REPLY

Login before adding your answer.

Traffic: 2701 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6