Entering edit mode
3.5 years ago
mbartl13
•
0
Hi all-
I am processing RNAseq data with Kallisto/Sleuth. I am creating the sleuth object:
so <- sleuth_prep(metadata, target_mapping = ttg,
+ aggregation_column = 'ens_gene', extra_bootstrap_summary = FALSE)
and get the following output:
reading in kallisto results
dropping unused factor levels
.......................
Error in forderv(x, by = by, sort = FALSE, retGrp = TRUE) :
Failed to allocate TMP or UGRP or they weren't cache line aligned: nth=12
Is this a common R issue? Any recs for how to fix?
Thanks!