Question

Publicly Available RNA-Seq Datasets from Human Heart

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3.5 years ago

biogrin ▴ 20

Hi all,

I'm looking for any publicly available RNA-seq data from human normal/healthy real heart tissues.

Can anyone suggest me sources where I can find this?

Thanks a lot in advance.

RNA-Seq heart cardiomyocytes • 1.2k views

ADD COMMENT • link updated 3.5 years ago by Jeremy Leipzig 22k • written 3.5 years ago by biogrin ▴ 20

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I worked in this area for a while, and we did not share human DNA publicly for privacy reasons. Also, healthy heart is not often given for scientific use. Our control tissues included an 85-year old, and the only available healthy heart under age 70 was listed cause of death: cocaine.

ADD REPLY • link 3.5 years ago by karl.stamm 4.1k

score 2 · Answer 1 · 2020-10-21

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3.5 years ago

Pierre Lindenbaum 161k

https://www.encodeproject.org/matrix

ADD COMMENT • link 3.5 years ago by Pierre Lindenbaum 161k

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Link for ENCODE experiments related to heart.

ADD REPLY • link 3.5 years ago by GenoMax 141k

score 2 · Answer 2 · 2020-10-21

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3.5 years ago

GenoMax 141k

Human bodymap v.2.0 data: https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-513/

SRA-Explorer (LINK). Search with heart[All Fields] AND ("Homo sapiens"[Organism] OR human[All Fields]) AND rnaseq[All Fields]

ADD COMMENT • link 3.5 years ago by GenoMax 141k

score 1 · Answer 3 · 2020-10-21

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3.5 years ago

Friederike 8.9k

Did you check the GTEx portal? https://gtexportal.org/home/

ADD COMMENT • link 3.5 years ago by Friederike 8.9k

score 1 · Answer 4 · 2020-10-21

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3.5 years ago

Jeremy Leipzig 22k

https://jhubiostatistics.shinyapps.io/recount/ I see at least 16 studies with cardiac tissue

ADD COMMENT • link 3.5 years ago by Jeremy Leipzig 22k