Hello, I have used SNPEff for variant annotation. I built own database using GRCH38 release 84. In the output file I get 2 fields for gene name and gene id but instead of gene names I get gene ids in both fields. I had used RefSeq too but it gives a lot of missing information. Can anyone help me with how to get gene names in output. Thank you .
CHROM POS ID REF ALT QUAL FILTER INFO FORMAT
1 14776 rs201013861 G A . PASS ANN=A|upstream_gene_variant|MODIFIER|gene:ENSG00000278267|gene:ENSG00000278267|transcript|ENST00000619216|miRNA||n.-2592G>A|||||2593|