Question: MCODE cytoscape analysis
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gravatar for Bioinformatician_in_trouble
5 weeks ago by

Hello all, I hope you all are doing good. I have made clusters of a string PPI network using MCODE from cytoscape but I am not sure how to do the analysis? How do I evaluate the significance of the clusters obtained? Is the highest scoring network considered the best? This is the first time I am doing clustering. Would really appreciate it if someone could take out their valuable time to help me. Thank you.

mcode cytoscape • 160 views
ADD COMMENTlink written 5 weeks ago by Bioinformatician_in_trouble10

You may have seen these already, but there are tutorial and documentation links from both the MCODE app and clusterMaker2 apps, which can each perform MCODE clustering:

If you are asking about MCODE clustering in general, perhaps this paper is a good place to start: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-4-2

ADD REPLYlink written 5 weeks ago by xanderpico300
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