Java/Python Modules For Random Forest Genomic Data Analysis

Question

[grittygeek]

Hello,

I am aware of R statistical package and Ruby codes available for building Random Forest on Genomic data. However, I would like to know if there are any Java/Python packages available for such task.

Thanks

Answer 1

[brentp]

For Python, sklearn has random forest classifier and regressors:

http://scikit-learn.org/0.11/modules/ensemble.html#forests-of-randomized-trees

I haven't used those classes, but sklearn is very well documented and actively developed.