How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?
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9 months ago
Optimist ▴ 170

Hello All,

I want to download all the Genomes of Pseudomonas aeruginosa from NCBI genomes database. As of now (23/10/2020), there are 5556 genomes for species Pseudomonas aeruginosa.

Kindly let me know a way to download all of them. Preferably with strain name .

Thanking You

NCBI Genome Assembly database download • 370 views
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9 months ago
vkkodali ★ 2.6k

You can download these data directly from NCBI using the Datasets tool. Check out: NCBI Datasets for more details.

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Note: Web interface for NCBI datasets only provides access to Eukaryotic genomes. Use command line option for all genomes including bacteria.

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