Question: How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?
0
gravatar for Optimist
5 weeks ago by
Optimist100
Optimist100 wrote:

Hello All,

I want to download all the Genomes of Pseudomonas aeruginosa from NCBI genomes database. As of now (23/10/2020), there are 5556 genomes for species Pseudomonas aeruginosa.

Kindly let me know a way to download all of them. Preferably with strain name .

Thanking You

ADD COMMENTlink modified 5 weeks ago by vkkodali2.2k • written 5 weeks ago by Optimist100
1
gravatar for shenwei356
5 weeks ago by
shenwei3565.6k
China
shenwei3565.6k wrote:

https://github.com/kblin/ncbi-genome-download or https://github.com/pirovc/genome_updater

ADD COMMENTlink written 5 weeks ago by shenwei3565.6k
1
gravatar for vkkodali
5 weeks ago by
vkkodali2.2k
United States
vkkodali2.2k wrote:

You can download these data directly from NCBI using the Datasets tool. Check out: NCBI Datasets for more details.

ADD COMMENTlink modified 5 weeks ago by genomax92k • written 5 weeks ago by vkkodali2.2k
1

Note: Web interface for NCBI datasets only provides access to Eukaryotic genomes. Use command line option for all genomes including bacteria.

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by genomax92k
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